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add_tree()
- Add a comparison tree to an existing node presence matrix
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check_taxa()
- Diagnose taxon consistency between backbone and comparison trees
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node_presence_matrix()
- Tabulate clade recovery and support across trees
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plot_phylorug()
- Draw a phylorug: a backbone tree with rug plots on every internal node
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prune_to_shared()
- Trim the backbone and its comparison trees to their shared set of taxa
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read_trees()
- Import phylogenetic trees from a directory
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sample_trees
- Sample beetle phylogenies (15-taxon subset)
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translate_tips()
- Relabel tips across a list of trees using a lookup table
